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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev encourage scientists to …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev encourage scientists to …
Learn more
I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. Dr. … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) … Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … where her group focuses on the interactions between seagrasses, considered marine flowering plants, and their …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science … group. His research focus includes engineering of non-model yeasts for production of biofuels and renewable … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Extracting the Secrets of Secondary Metabolites
CRAGE-CRISPR combo helps further demystify biosynthetic gene … secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … employing CRAGE, researchers are no longer limited to using model host microbes; theoretically, any microbe can serve as …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … of Cell Identity as an R package … Education … Selected Publications … Software …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported project studying …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC … Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first … National Laboratory (Berkeley Lab) and the Laboratory for Research in Complex Systems (LRC) in Menlo Park, Calif. … “She understood that it was a bacterium belonging to the genus Thiomargarita ,” Gros noted. “She named it Ca. …
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