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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( https://ror.org/04xm1d337 ), a DOE Office …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms … This research was supported in part by the Allen Distinguished Investigator Program, …
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, Kathryn Fixen, … Daniel S. Gregoire; [Middle] Andreas Guerrero, Michelle Hulin, Aditya Kunjapur, Seung Hwan (Allen) Lee, Han Li; [Below] … Miller, Xuefeng (NIck) Peng, Amy K. Schmid, Ritu Singh, Jiaqi Tan, Claire Willing Each year, the Joint Genome …
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DOE JGI Interns Share Their Summer Experiences
… This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and also do some …
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Introducing New Members of the JGI User Executive Committee
… – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full roster of members. … Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of … to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As such, they are considered …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … result. “It troubled me for a long time that we had only a handful of representatives of this virus group,” said … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The Science Through a combination … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. … Montana State University release  MSU scientists’ discovery in Yellowstone ‘extremely relevant’ to origin of life …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … tracked the impact of a large-scale heatwave event in the ocean known as “The Blob.” The event was recorded … Research (SCOR), the US Department of Energy (DOE) Joint Genome Institute, an Office of Science User Facility, …
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