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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … calls. Nearly 200 Terabases of data are expected to be generated for the accepted proposals, said Susannah Tringe, … Biological and Environmental Research (BER) initiatives in bioenergy crop improvement and terrestrial carbon …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility … to the development of bio-based products and next-generation technologies, and toward a secure energy … the CSP, and as part of microbiome research involving the Bioenergy Research Centers. He is currently also working …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … shed light on the global biogeography in the haloarchaeal gene pool, a team led by University of New South Wales … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary … secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … associations allow host plants, such as candidate  bioenergy feedstock crops, to acquire nutrients. … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute (JBEI). Questions and answers from the … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor … conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a …
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A Plantiful Future: Xiaohan Yang
… Can plants help humans attain a renewable energy future? Can they help lock away more … Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of …
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final …
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Learning to Look
… Machine learning approach significantly expands inovirus … As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several … “What we’re really doing is looking for a particular gene found in all inoviruses, and then checking the …
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JGI Workshop at SIMB NP Meeting
… and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of …
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