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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and … in flowering plant gene regulation." Nature Plants 11, no. 8 (2025): 1514-1527. Lax, Carlos, Stephen J. Mondo, …
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JGI at the AGU Fall Meeting
… (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in … of newly sampled microbial genomes from North American watersheds (Invited)” 4pm CST Convention Center, Poster Hall … controls of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to … that work like assembly lines for efficiency.  In 2021, her team saw that four strains of anaerobic fungi also, …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. … RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project …
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New and Improved: Eucalyptus Reference is Now Accessible
… | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been widely … relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with … Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was visualized with GENESPACE, a …
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JGI Announces 2026 New Investigator Portfolio
… metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal systems to coastal wetlands … interactions that enhance crop resilience and soil health. Proposals are accepted year-round for this …
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Extracting the Secrets of Secondary Metabolites
… in overcoming this obstacle when it hit the scene in 2019. Now, that power is poised to grow exponentially by … User Facility, is supported under contract DE-AC02- 05CH11231. …
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JGI User Executive Committee Expands
… on dead wood decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in … user program participation from researchers at non-R1 institutions, now defined as those that don’t spend …
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Trent Northen
… Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … bacterial polyphenol metabolism in an anoxic wetland soil. Nat Commun. 2021 Apr 29;12(1):1-6. …
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Frederik Schulz
… Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … metagenomics. Nature Reviews Microbiology 20: 721 Volland, J.-M. et al. 2022. A centimeter-long bacterium at … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Roux et …
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