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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with … provides a foundational data set that is now available through a new  single-cell data viewer that was …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI … “significant influence in their chosen field or fields through the publication of multiple highly cited papers … rot fungi in the genus Lentinula. Dan Rokhsar looked to the evolutionary history of strawberries as part of a study to …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The … relative, the candidate bioenergy crop, switchgrass. Through the JGI’s Community Science Program , JGI sequenced … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group … and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, … BS in BioEngineering, University of California, Berkeley … Education …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques take advantage of … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … army of the dark wizard Saruman repeatedly tried to break through, finally resorting to explosives to succeed. …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … from multiple boxes, including some duplicates, to sort through in order to form a single cohesive image. An …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … is a kind of movable feast being deconstructed as it goes through the honey bee gut. Early on, monosaccharide sugars … One other finding that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … the microbes involved in successfully biodegrading PCE.  Through the JGI’s  Community Science Program , they were …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data sharing … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … technology described by the Nobel Foundation as having “a revolutionary impact on the life sciences.” Building upon … Tyson GW et al. Community structure and metabolism through reconstruction of microbial genomes from the …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program in order to get  M. … This work was supported by the Plant-Microbe Interfaces program at the …
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