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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many … it to any genome of interest.” This figure outlines the general methodology he and Rokhsar came up with: Until they …
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JGI announces 2024 Functional Genomics awardees
… genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional … and omics capabilities to enhance understanding of gene and genome function. Tapping into these functions …
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The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
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Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms
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Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.       Despite advances in sequencing technologies and computational methods in the … A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, …
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … of within species recombination, indicating variation in gene flow between the analyzed community members. The Impact …
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2024 Progress Report
… use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … spatial transcriptomics, and cell- and cell-free expression platforms.  … We closed our 2018 Strategic Plan …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … genomes’ metabolic pathways could lead to the discovery of genes that could be used for multiple biotechnological … moss sex chromosomes continue to evolve so rapidly in gene content and structure. He and JGI Plant Program head …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding … the Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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