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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special … community of researchers studying actinobacteria to share information and data. The filamentous actinobacteria are of … in the JGI Natural Prodcast podcast , where she talks about this community resource. ) “Most people study …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a … individual genome highlighting the fact that the genetic information in a single reference genome is insufficient. …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab … labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month … Garden Club In her work at Berkeley Lab, Doina Ciobanu generally works at a single-cell level as part of the JGI … Members from across Berkeley Lab gathered to learn more about planting and tending these shoots of their own. The …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful … of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the November 2025 issue of … This work was supported by the Department of Energy (DOE) Office of …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video … with metabolomics analysis.  Q: Can you give us an idea about the scale of an average study? How many samples are … apply to access the JGI’s resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users …
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle … The Chief Informatics Officer provides advice and strategic direction for …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first … and a co-first author on the study, performed the 16S rRNA gene sequencing to identify and classify the prokaryote. “I … explained. “This kind of discovery opens new questions about bacterial morphotypes that have never been studied …
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