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… on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …

Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … than 15,000 secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …

… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … has been eliminated at NRAP, and efforts are ongoing to complete cleanup.  The process that was used to clean up the … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …

… 2024 was a year of first, including the flagship internship program between … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in … their mentors and fellow interns. Inspired by the success of the UC Merced internship program, they left the JGI more …

… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing …

Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …

… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …

… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …

… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … sequenced and assembled by the JGI. From these assemblies, complete or near-complete population genomes were …

… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …