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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … been able to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … researchers with a sampling puzzle of extraordinary complexity. Beyond the sheer number of undiscovered species …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … Yoshikuni Project: “ Development of a multiplex genomic integration system for the selection of genes essential for … Project: “ Investigating metabolic network of symbiosis using genome-scale metabolic models ” Pedro Antonio Perez …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … Laboratory (Berkeley Lab). “This represents the largest integration of single-cell datasets in plants and provides a … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in … was done through the JGI Community Science Program . Using an ecology metric called beta diversity, the team …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … to provide an improved eucalyptus genome assembly generated using advanced technologies to reconstruct the complete … Africa. The South African team collected the plant tissues. DNA and RNA sequencing were conducted by the JGI, along with …
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics
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Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum
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