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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that run on microbial genomes and metagenomes. He also works on …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the … interact below the ground, influencing the production of microbial greenhouse gases and volatile organic compounds. …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … an interactive browser that allows other researchers to study the genomes and predict the metabolic abilities of these microbes. The Impact This study illustrates how the research community brings together …
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Searching for new branches on the tree of life
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … this Lawrence Berkeley National Laboratory (Berkeley Lab) Newscenter story and this piece in  Current Opinion in …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: …
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IMG Webinar Series
Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have … as multiple copies across the chromosomes. In a follow-up study , researchers focused on two types of naturally … JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving fungal rust pathogen …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … history and perennial lifecycle makes it important to study directly. The large and complex genome of  M. sinensis … is a tetraploid, with four sets of chromosomes; the study showed that these sets descend from two now-extinct …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region … by allowing the generation of preliminary data for a larger study.” … The U.S. Department of Energy Joint Genome …
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