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Hiroshi Otani
… of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … this approach through the Emerging Technologies Opportunity Program (ETOP). Following that work, they partnered once …
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Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)
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The Expanding Universe of Methane Metabolisms in Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome … to environments found on early Earth.”  Through the JGI Community Science Program, Inskeep and McKay recovered …
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Waiting to Respire
… and Saganbacteria were named for Carl Sagan, a renowned science popularizer and communicator (and at one time, the … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus … the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. Department of Energy …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research … other functional genomics datasets generated by JGI user science projects. … BS in Biochemistry and Biological …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on semantic and … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been …
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Accelerating Metagenomics Discoveries with Deep Learning
… the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … in order to create more useful tools for the bioinformatics community. Other work presented at the workshop included how … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for … in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a …
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