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From Berkeley to Binghamton: Tracking Strawberry Evolution
… how crops and model organisms may evolve.  Determining the genetic codes of plants is often challenging because in many … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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JGI Announces 2023 Community Science Program Awardees
This year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, understanding natural communities important for carbon …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Thai Dao
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… proteins, as well as recycling nitrogen. Now, with insight into a specific enzyme class that’s important to the way … of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized … This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified across different …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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2025 NeLLi Symposium
Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis
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Tracking the Origins of Methane-Producing Microbes
… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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Expanding Virophage Diversity
… viruses. Almost all known virophage genomes share only four genes in common: major and minor capsid proteins (MCP and … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without previously known …
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Viruses Reprogram Cells into Different Virocells
… about virus-infected microbial cells that are transformed into virocells, and how the outcomes of these infections can … in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and … models. Next, the researchers are working towards better understanding how nutrient availability, or lack thereof, …
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