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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Georg Rath
… Mr. Rath has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine … The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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Busting the Unbreakable Lignin
… to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … For further details, please reach out to the Group Lead …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and … or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career scientist as a …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Congratulations to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … J., Sneddon, M., and Yang, X. Metagenomic library and natural product discovery platform. WO2021163637A1 , PCT …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … and publish first-author papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt …
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