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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have … many viruses simultaneously, these genomic studies provide information about virus hosts. As a result, the outcomes of these … This work was conducted by the US Department of Energy Joint Genome …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial … to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes … see that SAR324 was made up of four ecologically distinct clusters, or ecotypes. These ecotypes fall into two main …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … out these distractions. Combining genome and transcriptome information allowed the team to have a much more … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), … A record number of primary users — 2,456 — had active … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut … .  The latest article, published January 27, is about engineering plants and their microbiomes for more … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program …
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, … genomics research from scientists who translate genomic information into biological function. Through our CSP … and omics capabilities to enhance understanding of gene and genome function. Understanding these functions …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of those shared by both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image …
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