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De novo Nanopore read quality improvement using deep learning
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Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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At the Forefront of Terrestrial Virus Research
… Gary Trubl is finishing his PhD in Microbiology at The Ohio State … Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities at DOE laboratories.   …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … and sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer them, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … postdoctoral researcher at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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