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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … obtained from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … United States began forming in Alaska. Over the next two years it slowly spread, raising water temperatures by a few … and 2016, Hallam and his colleagues collected more than 270 water samples. Genomic DNA extracted from the water …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a … type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … production. A reference genome for the sugarcane cultivar R570 has been  published in  Nature by an international … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The … more nutrients to fuel growth. The Impact Over the last 40 years, summer sea ice in the Arctic has decreased by more … Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy Joint Genome …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs … is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint Genome …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC … of California, Merced to start orientation as a first-year graduate student in the Quantitative Systems Biology … I’ll take that knowledge back with me.” Now a second-year evolutionary biology student in David Ardell’s lab, he …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific … view of a population’s genetic makeup and identifying viruses interacting with these populations. Development of … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 … CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be …
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