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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and biology of human …
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DAS Tool for Genome Reconstruction from Metagenomes
… contributions, is key to understanding their ecosystem functions in processes ranging from nutrient cycling to … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this approach would be greatly increased by having the …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from … demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … hone science presentation skills, and participate in professional development enrichment activities. For some … Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career in genomics and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot … and it gives us new insights into microbial diversity and function.” He is already finding ways to utilize the catalog …
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Steven Wilson
… and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, … automated sequence quality control and automation of microbial/metagenomic assemblies, portals that make data … he worked with the Informatics Department to develop software that pushed instrument run information directly into …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … roughly half of all genes have completely unknown functions — like a vast library of books written in a … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … green algal genomes using Chlamy as a reference for functional annotation, including Chromochloris zofingiensis …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … to living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … (Berkeley Lab), have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the … — so researchers can easily explore the evolutionary and functional relationships among the different algae. …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … communities. By pairing RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go … These analyses provide granular insight into microbial functions, traits and competition, illuminating the inner …
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