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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … reflect JGI’s interest in algal research for bioenergy production and algae’s roles in nutrient cycling, now a …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and … AB in Physics, Princeton University, NJ MS in Theoretical … Publications … 2018 Marthella Foskett Brown Chair, Computational Biology, UC …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … The work conducted by the US Department of Energy Joint Genome Institute ( …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new … to provide an improved eucalyptus genome assembly generated using advanced technologies to reconstruct the complete … operated under contract no. DE-AC02-05CH11231. The bioinformatics work conducted at the University of Pretoria was …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – …
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Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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Genome sequences of four novel Endozoicomonas strains associated with a tropical octocoral in a long-term aquarium facility.
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … DAP-seq method overcame some of these challenges by using  in vitro -expressed TFs and fragmented genomic DNA, …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … BS, Engineering, Tokyo Institute of Technology Master's, … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between … successfully automated aspects of a commonly-used process for studying microbial communities, with results published … applications in industry and biotechnology for the production of  clean energy . Summary Arbuscular mycorrhizal …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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