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Igor Grigoriev
… Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … led to the identification of 328 “high quality” (based on completeness) diverse new virophage genomes containing all …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … genome science capabilities to support BER's mission of achieving a predictive understanding of complex biological, earth, and environmental systems for energy and …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … has been eliminated at NRAP, and efforts are ongoing to complete cleanup.  The process that was used to clean up the … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …
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Cultivating Symbiotic Antarctic Microbes
… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … sequenced and assembled by the JGI. From these assemblies, complete or near-complete population genomes were …
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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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Deconvolute individual genomes from metagenome sequences through short read clustering
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