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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … has been eliminated at NRAP, and efforts are ongoing to complete cleanup.  The process that was used to clean up the … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with their mentors and fellow interns. …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Cultivating Symbiotic Antarctic Microbes
… in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … sequenced and assembled by the JGI. From these assemblies, complete or near-complete population genomes were …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
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