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Defining a Pan-Genome for Antarctic Archaea
… broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … Research Council (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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MGM Workshop at Fisabio Summer School 2026
… Register here for the workshop The MGM Workshop is Module 4 of the Fisabio Summer School.  The workshop is addressed to … professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these datasets, researchers made a pan-genome containing four  B. hybridum  genomes and many  B. distachyon genomes. …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades … working to address some of the most pressing challenges of our time. For more information, please visit  …
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DAS Tool for Genome Reconstruction from Metagenomes
… approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … and interactions. Supported by JGI’s ETOP, this new tool will now be available for JGI users interested in … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … Trying to maintain v12’s codebase and legacy data resources and hardware, while also developing a modern and … choose the genome you’re after as the dataset. From the (new and improved JGI Data Portal).  Go to  …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
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Leo Baumgart
… team responsible for piloting and operationalizing new genomic technologies, integrating automated liquid … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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