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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… Trubl, a virologist and postdoc at Lawrence Livermore National Laboratory, is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s carbon as well as material that can be converted to energy, are … growth rates, decomposition, and carbon sequestration. Researchers wanted to better understand how sphagnum adapts …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to … findings could help us grow better crops, with less impact on our planet. …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the …
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Ben Bowen
… spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral alignment, molecular … discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and …
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Atif Shahab
… led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This … streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of … Mr. Shahab has extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. … like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever … of Energy, Office of Science, Biological and Environmental Research, Early Career Research Program awarded …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy … genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Corals in Hot Water Get Help From Their Microbes
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