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… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the …

… Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …

… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … sequence of sugarcane was published as a step forward in this effort. Sequencing and assembling the genome required a …

… Highlighting the latest interactive version of the JGI’s plant data portal. On … current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … establishing control over reproduction was a likely key to this evolutionary transition. Using this model, researchers … reliant on the continued presence of the bacteria. By studying the Rm-Burkholderia symbiosis model, the team was …

… Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … 2021. Q&A from the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from all … reach out to any of them with questions. Q:  Apart from instrumental support, how much help can users expect for data …

… By characterizing the structure and function of a methylthio-alkane … sulfur compounds in the atmosphere.  Beyond bacteria, this enzymatic machinery has potential as an industrial … innovation ecosystem. “At JGI, we’ve done the synthesis, metagenome mining, all the way from sequencing to functional …

… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …

… Laboratory (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for … Faculty interested in developing proposals with JGI and Biosciences Area researchers should contact David Gilbert …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … work appeared in the June issue of  Studies in Mycology . This work was enabled in part through  JGI’s  Community …

… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate … activities. For some students in the 2021 cohort, this was their first internship experience, while others … Blurring the Line Between Plasmids and Phages …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … fungal isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …