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… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, … BBTools is a suite of fast, multithreaded bioinformatics tools designed for …

… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model …

… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … sample — a small proportion of the sample’s billions of bacterial and archaeal cells — and detected the virus in 34 …

… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …

… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … metabolite standards, and development of high-throughput untargeted analysis pipelines.  Beyond profiling over 10k …

… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …

… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large …

… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the … to experimental manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, …

… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the …