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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on how bacteria function and … di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It plays an important role in regulating microbial cellulose production …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … capabilities available on a peer-reviewed competitive basis via its  User Programs . Q:  Are applicants outside of …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical …
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JGI@25: The Little Alga That Could
… is a single-celled alga with a unique place in evolutionary history. Retaining ancestral features of both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … lab and second author on the paper, studied viral genetics and gene therapy before self-training himself as a …
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What Happens Underground Influences Global Nutrient Cycles
… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … assessing the distribution of genome-derived functional traits through the soil profile and their relationships with …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to … to drought. They found that trans-regulating factors are important regulatory elements that determine drought …
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Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace … Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the … of JGI PPE requirements. When working in the lab, it is important that we follow these requirements and remind our …
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