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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … Liu Project:  Promoter Characterization of the Bacillota Bacterial Phylum Saray Maeda Mentors: Jonelle Basso, Heejung …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science … genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced … worked on ranged far and wide — from implementing new data visualization tools, to using natural language … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image to … Intern: Brendan Blasius (undergraduate) Mentor: Guohong "Albert" Wu Click …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … proteins are important for primary metabolism such as photosynthesis and gene regulation.  Mock and his team then … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … discovered transposition and its ability to turn character traits on and off and, “who I had the great fortune to know … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI announces final round of 2022 Functional Genomics awardees
… Twice each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of …
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