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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA … Graduate Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and …
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First Monoploid Reference Sequence of Sugarcane
… Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … To create this reference sequence, the team relied on bacterial artificial chromosomes (BACs), vectors that can … The JGI sequenced half of the 4,500 BACs sequenced for this project that were colinear to the gene-rich part of sorghum …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical … This work conducted by the U.S. Department of Energy Joint Genome …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded … in genomes.” He’s working with Rokhsar on a newer genome project, and enjoys the fact that he can use what they’ve …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available and  described … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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Statement on the Use of Genomics Data
… the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … ability of the principal investigators of approved JGI user projects to publish the primary report of their data without …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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Virus-Microbe Interactions of Mud Island Mangroves
… University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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