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Large Direct Repeats Flank Genomic Rearrangements between a New Clinical Isolate of Francisella tularensis subsp. tularensis A1 and Schu S4
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Tanja Woyke
… postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist appointment at the Bigelow … for Ocean Sciences since 2012 and an Adjunct Professor at the University of California, Merced's School of …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Secrets of the Needles: What Microbes do on Conifer Leaves
… ecosystems as past studies have mainly focused on root-associated microbiomes. Scientists conducted a shotgun … Biological and Environmental Research program because of its relevance to understanding the assembly, function, and … summer project in the JGI-UC Merced Internship Program. In 2023, Shayna Bennett, a UC Merced graduate student in …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and … into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology … spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to … Mario Melara, Elais Player-Jackson et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service …
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Defining a Pan-Genome for Antarctic Archaea
… by studying the microbial communities in Antarctic lakes, some of which have salinities 10 times that of seawater. To … the haloarchaeal gene pool, a team led by University of New South Wales (UNSW)-Sydney professor Rick Cavicchioli compared two strains of haloarchaea …
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