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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … Why is a resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the … that to include six more species, so in total, we are looking at 18 different species, which included over 2000 …
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A Plant Root Atlas for Tracking Developmental Trajectories
… team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and Uwe Ohler … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … are hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … to identify which pathway corresponds to which metabolite. Finding a vehicle by which to introduce CRISPR into the …
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Fungal Friends or Foes in Plant Roots
… compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings were described in a recent Nature Communications …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the … in wild populations for the first time. A 2020 Nature Genetics paper describing the genomes of the five major …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … modification happening in the absence of oxygen. These findings offer the first real irrefutable proof that lignin …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. … and how great it was to have an experienced career scientist as a mentor.  …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  … Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of cellular complexity and microbial … poster session will be held on November 4 at the National Atomic Testing Museum at the Desert Research Institute. …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the …
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Computationally Classifying Fungal Lifestyles
… learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in the June issue of  Studies in Mycology . This work was enabled in …
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Party in the Rhizosphere
… roots, creating a lively zone called the rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage pass. …
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