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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with … to stay informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Ancient  Chloroflexota s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered … could have the ability to manipulate plant growth.   Across the phylum, diverse  Chloroflexota show the ability …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … of 2016 and all of 2017 looking for  C. californicus across the California-Baja coast and spots where they are …
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JGI Scientists Pen Genome Watch Articles
Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on …
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The JGI Data Portal: Improving User Experience
… download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal is currently only … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … world, encompassing 54 researchers from 14 organizations across nine countries. Learn more about the Hungate1000 work …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … a total of 44,652 complete or near-complete viral genomes across both datasets, separating these from the vast …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … in plant research laboratories and plant biology courses across the globe for insights into reproductive, space and …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … diverse lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for other plants, …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating … Successful Proposals December 9  4:15pm PT (online) Town Hall on how the Facilities Integrating Collaborations …
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