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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … chain reaction technology that enables researchers to generating thousands to millions of copies of a particular … transcriptomics for microbial genomic activity (gene expression), and direct microscopy. Through the JGI’s …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane … an enzyme system that was previously only understood at a genetic level. Functional and structural experiments showed … convertible to ethylene, he began looking into the genetic foundations of what would become the MAR enzyme .  …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … on, from the myriad of omics analyses for understanding gene expression in plants and the environment, to the JGI’s …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … and then use computational tools to analyze biosynthetic gene clusters and then develop them for a range of … proposals reflect JGI’s interest in algal research for bioenergy production and algae’s roles in nutrient cycling, …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … (transcriptomes) from their soil samples. This gene expression dataset was particularly important for …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … genomes’ metabolic pathways could lead to the discovery of genes that could be used for multiple biotechnological … fruit and seed yield. Conversely, some crops such as bioenergy sorghum may need sterile males; plant breeding …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the network … Center), HudsonAlpha and the JGI also identified a gene related to seed dispersal in wild populations for the …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their … is an ongoing collaborative effort to improve the emerging bioenergy crop switchgrass ( Panicum virgatum ), which has … to customize the crop for additional end products. The genetic diversity within this set of plants, each with a …
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