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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of … protocol for injecting a solution that bolsters the immune system of oaks and enables them to fend off the effects of … and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News …
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Picking Up Threads of Cotton Genomics
… All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … Agricultural University (China), Texas A&M University System, U.S. Department of Agriculture-Agricultural Research … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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DAP-seq Drives Robust Mapping of Gene Regulation
… the potential to expand opportunities for bioenergy and bioengineering applications. “We worked with 10 species ranging … have propelled the creation of a vast resource: nearly 3,000 genome-wide binding maps for 360 transcription factors … and engineer organisms tailored for bioproducts and ecosystem resilience.  Aligned with DOE Biological and …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… may in turn impact the host communities and their roles in carbon and other nutrient cycles. “This is the first study … distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic features … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this …
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Ben Bowen
… BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & Metabolic Biology … NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular …
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A Natural Mechanism Can Turbocharge Viral Evolution
… an organism’s fitness. Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what … and through a Challenge Grant from the California NanoSystems Institute at the University of California Santa … and Ambrose Monell Foundations, the Natural Sciences and Engineering Research Council of Canada, Genome British …
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Taking Stock of the Known and Unknown Microbial Space
… biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … the team found that bacterial isolate genomes represent 9.73% of the total estimated diversity of the available … estimated diversity of the available datasets. This leaves 36% of archaeal diversity with no genomic representation. …
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Hiroshi Otani
… BS, Engineering, Tokyo Institute of Technology Master's, … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional …
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Nigel Mouncey
… and DSM Nutritional Products in Switzerland, and as Bioengineering and Bioprocessing R&D Director and Leader at Dow … for Industrial Microbiology and Biotechnology in 2022-2023.   Commentary … Society for Industrial Microbiology and Biotechnology (2023) Charles Porter Award, Society for Industrial Microbiology …
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Integrating Experimentation with Data
… worldwide to explore complex biological and environmental systems using advanced experimental and informatic tools at …
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Matthew Kellom
… and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach …
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2023 Progress Report
… in studies of complex biological and environmental systems. We optimize our service to the community through …
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