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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Architecture, catalysis and regulation of methylthio-alkane reductase for bacterial sulfur acquisition from volatile organic compounds
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … that most bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to … 6th? All URLs with a domain of  https://phytozome.jgi.doe.gov will be forwarded ( where possible ) to their …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to …
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … diversity patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific … a strong role in my career interests post-Ph.D. in the sciences. “ Ul-Hasan was one of two UC Merced graduate …
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Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
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Approved Proposals
… proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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New and Improved: Eucalyptus Reference is Now Accessible
… to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … to the efforts of the  U.S. Department of Energy (DOE) Office of Science Biological and Environmental Research …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating … year 2026, in partnership with the Environmental Molecular Sciences Laboratory (EMSL) and other national user … increasingly collaborative and multidisciplinary nature of DOE mission science projects, this proposal call aims to …
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Examples: Successful LOIs & Submissions
… examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful … and Facilities Integrating Collaborations for User Science calls. These documents have been shared with …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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