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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … & Evolution of Self-Catalytic Introns across Earth’s Microbiomes Sonia Vargas and mentors Tomas Tyml and Frederik … study of root colonization by resident phages of a plant growth promoting bacterium. And my mentor is Dr. …
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Four Researchers Join JGI User Executive Committee
… evolution, ecology, genomics and function of microbes and microbiomes, especially those found in association with both domesticated and wild animal and plant hosts. One main focus of his service to the community …
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A Community Resource for Secondary Metabolite Researchers
… portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal … BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms … that makes up an individual’s genome. The genes of sorghum plants are likely responsible for the crop’s ability to … rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the full life cycle …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… enzymes discovered in extreme environments to engineered microbiomes that accelerate biomass processing. This year’s … approaches to unravel functional capabilities of plants, microbes and microbial communities, and …
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JGI Launches Latest Strategic Plan
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum … of scientists made an ambitious plan to begin to link the plant’s varying traits — height, biomass, hardiness to cold, …
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Mapping the Earth’s Hidden Fungal Kingdom
… estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … been at the forefront of tackling this enormous challenge, assembling one of the world's most comprehensive collections … genomic analysis due to their compact genomes. While plant and animal genomes can sprawl across billions of DNA …
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Benjamin Cole
… Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants coordinate their gene expression with light and …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This analysis led them to identify …
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You Can Move, But You Can’t Hide
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