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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Workshop at SIMB NP Meeting
… these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, has been developing and applying new genomics … that address these issues. Check the scientific program for relevant posters. …
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A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genes from isolates, there isn’t much scientists can tell about its function or its origin. As a result, these genes …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison … on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re … trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from … who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable …
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Daniel Udwary
Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the JGI, he … "Natural Prodcast" podcast, a "fireside chat"-style podcast about natural products and the science and scientists of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but … To access the genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and …
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NeLLi — Symposium on New Lineages of Life
… to function’ umbrella, this symposium will further focus on computational approaches to characterize novel … New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert Bowers,  User Project Coordination Rekha Seshadri,  Functional …
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