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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He … and to understand genome function in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s … bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab Director’s Award for …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … the more bacteria show up. The data underscore what was already suspected: these microbial groups play different roles …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping … sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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The Fungi That Survive In Antarctica
Black fungi are microscopic and mighty. They survive everywhere from Antarctica to … organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …
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Decoding Yellowstone’s Microbial Mats
Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … of this bacteria — most likely there is a virus that is already doing what you want in a sense, and can inform on how …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … communication and cooperation. Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … of gene and genome function, particularly those not readily achievable without the capabilities and expertise …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE Office of Science …
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