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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of faculty and researchers describe a workforce development … and developmental support from KBase (The Department of Energy Systems Biology Knowledgebase). Myco-Ed is …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… environmental changes. Researchers were able to identify specific genes that allow the algae to adapt to sudden drops … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … proportion of dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … community, such as a microcolony, microbial aggregate, or a specific subset of free-living cells. Extracted DNA may be …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … the door for more incisive investigations into how lichens function. One of their abilities that’s  now getting more …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … Lawrence Berkeley National Laboratory.  Now, enabled once again by the JGI’s Community Science Program, University of … help tree breeders execute more targeted efforts to produce specific lines with desired traits. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to a lab, because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … after polyploidization,” said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author …
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the air, plant rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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