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Virus-Microbe Interactions of Mud Island Mangroves
… the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. … selected with four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of …
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Three Join the JGI User Executive Committee
… and Elizabeth “Lizzy” Wilbanks of the University of California, Santa Barbara. They join eight other JGI users … she is committed to representing and advocating for early career users on the UEC. As a user of the JGI and … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … LA, Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and genomes …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about 6% of the human … cancer. Lawrence Livermore National Laboratory had teams studying Chromosome 19, which contains about 2% of the human … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … that combines and builds on two standard techniques for identifying viruses and plasmids. Until now, most other …
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JGI@25: Building a Better Bean
… in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as … by Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State … Nature Genetics . “Common beans are a major societal crop for those with severely limited income,” McClean said. …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the … the Lab. “This project represents part of our long term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as …
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Training the Next Generation of Talent
Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … the first participants in the DOE JGI/University of California, Merced Genomics Distinguished Graduate Internship … Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for profiling …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … DOE Office of Science user facility with broader national efforts to promote and stimulate a bioeconomy, where … and biomanufacturing.  As a leader in genomics for bioenergy and environmental solutions, the JGI is …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the … slides and anticipating the inevitable questions about the study’s methods and analysis, Lawrence is spending time on …
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