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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … be the first publicly available, river-focused microbial resource that provides information at multiple scales from … can successfully partner with DOE user facilities and resources on such large-scale multi-omic data efforts, but …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a … alternative fuels from plants is the high cost and resource requirements of processing these sturdy materials, … for other bioproducts.”  This is Part 2 of our three-part “Guts R Us” series. You can find Part 1 here . …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies … continents, including Antarctica where it is a major part of the flora, fire moss has adapted to conditions such as UV …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … the journal  Developmental Cell and provides a community resource that could help researchers track cell development …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … under contract no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing … by the National Science Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … great strides in generating genome sequences for members of the microbial world through bulk community sequencing …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The … and female sexes. For the first time, the sex chromosomes of shrub willow have been sequenced with sufficient …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover just above. Described as a “river of grass” … could take on a project like this because we have the resources as a user facility. The Metagenome Program team …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … are a little bit stronger in computing, so I was kind of worried coming into the, the internship that maybe I didn’t have as good of skills as somebody else might have. But Robert, uh, Bob …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to …
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