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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … science.  Dr. Sneddon is an accomplished leader in data, software, compute, and AI for large-scale genomics and lab …
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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating … for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … Sabeeha Merchant of the University of California, Berkeley studies the alga  Chlamydomonas reinhardtii , one of …
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Hiroshi Otani
… and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … for breeders and researchers to harness the traits that let this biomass powerhouse thrive. Within its genome, … HudsonAlpha Genome Sequencing Center. Surfacing new knowledge with a pangenome Using this pangenome resource, this …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… The practices that support agriculture – such as efficiently using dwindling water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and bioenergy security for a steadily … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Gardeners and farmers around the country recognize that crop varieties grow best in certain regions. Most plant … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … from half of the United States. As  reported January 27, 2021 in  Nature , the team led by researchers at the …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … of virus-host interactions opens the possibility of using phages to engineer microbial communities. One day, …
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