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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while …
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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… internship experiences have influenced their careers in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … academia. And so this was the first time I was introduced into what a government lab and what this future could look …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Anna Ratner
… is working on the display and visualization of large omics data. …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered that the candidate … to past climate change will provide unprecedented insight into the mechanisms that perennial grasses have and will use …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … a video about the Biotech Partner summer interns at the JGI. What did you do for your summer vacation? …
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NeLLi — Symposium on New Lineages of Life
Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and … of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel microbial … (NIOZ) Nicole Poulton , Bigelow Laboratory of Ocean Sciences Roland Hatzenpichler , Montana State University   …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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