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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample … and analyzing the honey bee gut metagenome, which was done with the help of the US Department of Energy Joint Genome …
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When “The Blob” Made It Hotter Under the Water
… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … organic matter scavengers. This preliminary model aligns with several other studies on the potential effects of …
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The Case for Conservation
… Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome … noted, specific genes of interest could be associated with a plant’s sex. One outcome could be superfemale plants … males; plant breeding experiments could be completed faster without extra crosses. The work wraps more than a decade of …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Zerbe of the University of California, Davis. “The work with JGI was one of the first things we actually started … blends of terpenoids, naturally occurring organic chemicals with a wide range of potential applications. Q&A from the … if it can be done.  After the technical review, proposals with feasibility notes go to peer review, which is very …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per library. … PI. We currently use the ‘Base Modification Analysis’ tool within PacBio SMRT link, which works well for 6mA and 4mC …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle … D, et al.  SIMILE enables alignment of tandem mass spectra with statistical significance. SIMILE enables alignment of …
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Promoting the Power of Viral Metagenomics
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Graduate Students Get Thesis Research Opportunity at the JGI
… pressing problems. I’m very much looking forward to working with JGI and LBNL scientists and have access to unique lab … Production in California’s Canal System,” she will work with Susannah Tringe, JGI’s User Programs deputy and head of … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also Kaze’s …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … of the fifth summer of its flagship education program with UC Merced. JGI Director Nigel Mouncey and program organizers Wang, Visel and Sindi, along with UC Merced Undergraduate Research Opportunities Center …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for … Ecological Observatory Network (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to … to tackling fundamental scientific challenges aligned with DOE’s mission.” The Community Science Program Large …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with respect to the amount of within species recombination, indicating variation in gene …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … The DNA synthesis program combines these capabilities with state-of-the-art DNA design and construction, providing …
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