Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
Results
The phenylalanine ammonia lyase (PAL) gene family shows a gymnosperm-specific lineage
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
Discordant population structure among rhizobium divided genomes and their legume hosts
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
DRAM for distilling microbial metabolism to automate the curation of microbiome function
Fungal genomes mining to discover novel sterol esterases and lipases as catalysts
Interactions between plants and soil shaping the root microbiome under abiotic stress
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
