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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of … transcribed instructions for building and maintaining cells through the use of deep-sequencing technologies. The …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … These kinds of data could open opportunities along multiple avenues, including agriculture, climate modeling, …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … meal. In their evolutionary history, these fungi branched off early from aerobic fungi, which can breathe oxygen — … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … guys,” said Duplessis, who has collaborated with the JGI on multiple projects involving rust pathogens. “All along the …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for … to date.  This summer internship program, which began in 2014, pairs undergraduate and graduate students from UC …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … students. Being able to do this was beneficial to her in multiple ways. “At Berkeley Lab, we have an established set …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began colonizing the oceans  …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to … terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the … why the ancient moss sex chromosomes continue to evolve so rapidly in gene content and structure. He and JGI Plant …
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JGI@25: Fueling Investigation into Methane-Making Microbes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … capable of knocking down human RNA the way that CRISPR-Cas9 systems snip DNA. This could eventually lead to …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a … available in the latest release of IMG/VR . CheckV is freely available for download at: …
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