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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the … 10, 672-680. 2014 Blaby, et. al., Systems-level analysis of nitrogen starvation–induced modifications of carbon … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
A two-day kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of … JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We already …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team … Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research has been focused on … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … a protein called RECQ3 helicase is entirely deleted, potentially resulting in many large mutations. And this is …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … in inter-organismal interactions and terrestrial elemental cycling. George diCenzo of Canada’s Queens University aims a … meliloti .  S. meliloti is one of the rhizobia, a group of nitrogen-fixing bacteria with symbiotic relationships in …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of … organisms feeds into a better understanding of nutrient cycling across the planet. Summary To understand more about …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … genomes (MAGs) with varying quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the … studies on cultivated isolates are needed to convert the potential implications into applied science, contributing …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and … characterization and validation of the functional potential of these new lineages will provide new …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a more … in yeast ( Saccharomyces cerevisiae) to assess the potential of intermediate gene expression on two …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … It centers our work on four strategic themes: Nutrient Cycling, Functional Diversity, Data and Connectivity and …
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