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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … wide — from implementing new data visualization tools, to using natural language processing techniques to categorize … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … for breaking down biomass use aerobic methods (those using oxygen) to remove lignin and transform the remaining … The authors acknowledge their funding sources: Office of Biological and Environmental Research of the U.S. …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … in 2015 and 2016. At Station ALOHA , site of the 30-years-long Hawaii Ocean Time-series (HOT), they collected samples … Science Program . The metagenomes were also processed using the JGI-developed software suite, BBTools , and …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  …   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved understanding of multiple forest …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & … campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … We did so by analyzing this huge sample set specifically using results from tissue and condition-specific expression …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … their first internship experience, while others further along in their academic career enjoyed the chance to develop … Blurring the Line Between Plasmids and Phages …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they …
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