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… characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently in … back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest … capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to …

Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … Study of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the …

… link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … global RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …

For the first time in several years, the DOE Joint Genome … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me …

… 2023 marked a decade since the inception of the flagship … the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 interns in the …

Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … regulation is critical to ensuring genes vital for growth and survival across various environments are … sets associated with functions like stress responses and cellular differentiation. The tough part is identifying the …

DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … transcribed instructions for building and maintaining cells through the use of deep-sequencing technologies. The …

The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …

The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …