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Ian Blaby
… design and assembly, strain engineering and bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment environments, water and …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … and involved a lot of different players and researchers across many different labs to be able to sequence a genome.” …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … a “river of grass” that stretches some 580,000 square miles across southern Florida, they encompass a wide range of …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … is known about the impacts of these infections on ecosystem functions. As part of efforts to characterize global …
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Access to Rock Star Scientists
… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial … Wint, UC Merced JGI Mentors: Igor Grigoriev & Asaf Salamov, Fungal Program “Working at the JGI has reinforced my plans …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … (i) classifying viruses into groups that can be compared across studies, (ii) predicting which hosts these viruses …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … with the JGI’s growing efforts in establishing plant and fungal single-cell and spatial transcriptomic technologies, …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … with Woyke, two JGI users were also elected to the AAM: fungal researcher Jason Stajich of the University of …
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