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Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Using metagenomics eliminates confirmation bias, because it enables scientists to study how methanogenesis takes …
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JGI Workshops at PAG
… with the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics …
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JGI Advisory Committees Code of Conduct
… transparently, and ethically; Act on behalf of the JGI user community rather than personal agendas; Treat all other … the JLT of any accusations of professional misconduct or abuse of privileged positions in which the advisor has been … to a member of the JLT when JGI-related issues arise that cause you concern, preferably prior to airing your concerns …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
Plants provide photosynthesized carbon, while fungi deliver water and nutrients. In order to do so, these organisms … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … data this work leverages. These experiments focused on two species at once: the model legume species  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
Plants provide photosynthesized carbon, while fungi deliver water and nutrients. In order to do so, these organisms … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … data this work leverages.   These experiments focused on two species at once: the model legume species  …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Frederik Schulz
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… — one previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as … essential to understanding how these plant pathogens cause disease and how to control them. Despite advances in the … in SOD Blitz activity, and these data were subsequently used by three million others in the community. Returning …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… cow stomach. Rumen – and its microbes – are really a powerhouse. Rumen microbes have the ability to break down hardy … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows … the tools that are available these days and that are widely used by many, many scientists.”  Using samples of …
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Synthesis
The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain … Engineering Group : a research & development group and focused on new technologies and optimizing tools — including …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for …
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