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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … work. Former JGI postdoctoral scholar Margot Bezrutczyk collaborated extensively with Cole and Serrano to collect …
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2023 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … and professional expertise to support the global research community in studies of complex biological and environmental …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the virions out and moving the carbon within the microbial community. These findings also suggest that lytic viruses …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the crop for additional end products. The genetic diversity within this set of plants, each with a fully-sequenced … sustainable alternative fuels. Common Gardens Are A Community Effort The common gardens began nearly a decade …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Neha Varghese
… and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and … and implementation of microservices in conjunction with the IMG platform. …
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Ben Bowen
… the DOE’s Biological and Environmental Research user community in their bioenergy and environmental objectives. … … Achievement 2012 UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career … T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite atlases. …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their contributions to science. A panel of DOE researchers, program managers, and …
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